Sometimes non-cooperating tasks would occupy the processors and it was necessary to map these flops so as protect program logic from cross contamination. I do not recall how this was done.
The machine was the third Cray machine with substantial pipelining. It would suffice to broadcast a signal to other processors and arrange that none of you effects on memory happened until you knew that you were the only processor seizing that flop. Perhaps you would also have to cancel all loads subsequent to the turn-on, and redo them when the coast was clear.